In the rapidly evolving landscape of crop genetics, the book, Harnessing Genomic Tools for Crop Improvement is an essential resource designed for researchers, students, and professionals seeking to leverage bioinformatics tools for precision breeding. This comprehensive manual provides step-by-step guidance on utilizing molecular data derived from genetics and breeding experiments, offering hands-on instructions for key software applications in genetic diversity analysis, QTL mapping, genome-wide association mapping, haplotype analysis and genomic selection.
Beyond technical tutorials, the book explores cutting-edge bioinformatics tools such as sequence databases, BLAST, primer designing, and sequence alignment, ensuring users gain a holistic understanding of genomics-driven crop improvement. Definitions, terminology clarifications, and interpretation of the results help bridge the gap between theory and application, simplifying complex analyses.
Whether you are a novice or an experienced researcher, this book equips you with the skills to analyze and apply genomic data effectively, making it an invaluable asset for transforming geneticists into genomicists in both plant and animal sciences.
1. 13.1 Introduction - p. 393 2. 13.2 Terminology associated with protein interaction network - p. 393 3. 13.3 STRING database - p. 393 4. 13.4 Using the STRING database - p. 393 5. 13.5 Types of evidence for interactions - p. 393 6. 13.6 Customizing the network - p. 393 7. 13.7 Network view - p. 393 8. 13.8 Navigation tabs - p. 393 9. 13.9 Conclusion - p. 393 10. References - p. 393 11. Chapter 14 Navigating in silico drug discovery: A hands-on guide with AutoDock Vina and Discovery Studio - p. 419 12. 14.1 Introduction - p. 419 13. 14.2 Preparation of the protein - p. 421 14. 14.3 Preparation of ligand - p. 422 15. 14.4 Running AutoDock - p. 423 16. 14.5 Grid Box making - p. 428 17. 14.6 Conclusion - p. 439 18. References - p. 440 19. Chapter 15 Machine learning techniques for gene prediction - p. 447 20. Index - p. 469
In the rapidly evolving landscape of crop genetics, the book, Harnessing Genomic Tools for Crop Improvement is an essential resource designed for researchers, students, and professionals seeking to leverage bioinformatics tools for precision breeding. This comprehensive manual provides step-by-step guidance on utilizing molecular data derived from genetics and breeding experiments, offering hands-on instructions for key software applications in genetic diversity analysis, QTL mapping, genome-wide association mapping, haplotype analysis and genomic selection.
Beyond technical tutorials, the book explores cutting-edge bioinformatics tools such as sequence databases, BLAST, primer designing, and sequence alignment, ensuring users gain a holistic understanding of genomics-driven crop improvement. Definitions, terminology clarifications, and interpretation of the results help bridge the gap between theory and application, simplifying complex analyses.
Whether you are a novice or an experienced researcher, this book equips you with the skills to analyze and apply genomic data effectively, making it an invaluable asset for transforming geneticists into genomicists in both plant and animal sciences.
1. 13.1 Introduction - p. 393 2. 13.2 Terminology associated with protein interaction network - p. 393 3. 13.3 STRING database - p. 393 4. 13.4 Using the STRING database - p. 393 5. 13.5 Types of evidence for interactions - p. 393 6. 13.6 Customizing the network - p. 393 7. 13.7 Network view - p. 393 8. 13.8 Navigation tabs - p. 393 9. 13.9 Conclusion - p. 393 10. References - p. 393 11. Chapter 14 Navigating in silico drug discovery: A hands-on guide with AutoDock Vina and Discovery Studio - p. 419 12. 14.1 Introduction - p. 419 13. 14.2 Preparation of the protein - p. 421 14. 14.3 Preparation of ligand - p. 422 15. 14.4 Running AutoDock - p. 423 16. 14.5 Grid Box making - p. 428 17. 14.6 Conclusion - p. 439 18. References - p. 440 19. Chapter 15 Machine learning techniques for gene prediction - p. 447 20. Index - p. 469
